calculate population-level cell type proportions from single-cell data

calculate population-level cell type proportions from single-cell data

pop.ct.prop.scRNA(
scRNA,
cluster,
sample,
sep.group=F,
group=NULL
)

Arguments

scRNA	ExpressionSet object for single-cell data
cluster	character string specifying the variable name for cell types
sample	character string specifying the variable name for subject/samples
sep.group	logical. Whether to seperately calculate population-level cell type proportions by groups. The default is False.
group	character string specifying the variable name for group

Value

population-level cell type proportions